| 1 |
PDBTM
|
This server was shut down in 2023.
|
2004 |
975305
|
72487
|
|
|
PDBTM is the first comprehensive and up-to-date transmembrane protein selection
of the Protein Data Bank (PDB). The database was created by scanning all PDB entries with TMDET
algorithm.
|
| 2 |
TOPDB
|
This server was shut down in 2023.
|
2008 |
720126
|
204426
|
|
|
The Topology Data Bank of Transmembrane Proteins (TOPDB) is a complete and comprehensive
collection of transmembrane protein datasets containing experimentally derived topology information.
The database collects the details of various experiments carried out to learn about the topology of
particular transmembrane proteins.
|
| 3 |
TOPDOM
|
This server was shut down in 2023.
|
2008 |
607665
|
1135655
|
|
|
TOPDOM is a collection of domains and sequence motifs located conservatively in one side
of transmembrane proteins.
|
| 4 |
dt40
|
http://dt40.enzim.ttk.mta.hu
|
2015 |
43748
|
32045
|
|
|
In the dt40 homepage a de novo assembly of the DT40 genome can be downloaded or BLAST
searched. Further files with information about the DT40 genome and web links are also provided.
|
| 5 |
HTP
|
This server was shut down in 2023.
|
2016 |
315017
|
n.a.
|
|
|
The Human Transmembrane Proteome database and web service are a comprehensive
resources of the α-helical human transmembrane proteins. It contains topology and structure
information about the human α-helical transmembrane proteins classified into reliability levels.
|
| 6 |
MFIB
|
http://mfib.enzim.ttk.mta.hu
|
2017 |
2516
|
1441
|
|
|
Mutual Folding Induced by Binding (MFIB) database is a repository for protein complexes that are formed exclusively by intrinsically unstructured proteins (IUPs). As these proteins have no stable tertiary structure in their monomeric form, their folding is induced by the assembly of the complex.
|
| 7 |
PolarProtDb
|
https://polarprotdb.ttk.hu
|
2020 |
1364286
|
6886
|
|
|
PolarProtDb is the most comprehensive database containing experimentally verified
mammalian proteins that display polarized sorting or secretion, focusing at epithelial polarity.
In addition to the source cells or tissues, homology-based inferences and transmembrane topology
(if applicable) are all provided together.
|
| 8 |
TmAlphaFold
|
https://tmalphafold.ttk.hu
|
2022 |
268674
|
2566023
|
|
|
TmAlphaFold database provides open access to the membrane orientation of all
alpha-helical transmembrane protein's structure predicted by AlphaFold together with the
evaluation of the predicted structures.
|
| 9 |
LeishMANIAdb
|
https://leishmaniadb.ttk.hu
|
2023 |
202827
|
5940507
|
|
|
The leishMANIAdb contains experimental, computational and annotated information
about proteins from Leishmania species.
|
| 10 |
UniTmp/PDBTM
|
https://pdbtm.unitmp.org
|
2023 |
324696
|
2037693
|
|
|
PDBTM is the first comprehensive and up-to-date transmembrane protein selection of the Protein Data Bank (PDB). The database was created by scanning all PDB entries with TMDET algorithm.
|
| 11 |
UniTmp/HTP
|
https://htp.unitmp.org
|
2023 |
99238
|
901525
|
|
|
The Human Transmembrane Proteome database and web service are a comprehensive resources of the α-helical human transmembrane proteins. It contains topology and structure information about the human α-helical transmembrane proteins classified into reliability levels.
|
| 12 |
UniTmp/TOPDB
|
https://topdb.unitmp.org
|
2023 |
2320555
|
296775
|
|
|
The Topology Data Bank of Transmembrane Proteins (TOPDB) is a complete and comprehensive collection of transmembrane protein datasets containing experimentally derived topology information. The database collects the details of various experiments carried out to learn about the topology of particular transmembrane proteins.
|
| 13 |
UniTmp/TOPDOM
|
https://topdom.unitmp.org
|
2023 |
5835
|
237858
|
|
|
TOPDOM is a collection of domains and sequence motifs located conservatively in one side of transmembrane proteins.
|
| 14 |
BETA
|
https://beta.pbrg.hu
|
2024 |
375582
|
1028
|
|
|
BETA provides datasets of structures and sequences that were not used during AlphaFold2 training.
|
|
Sum |
|
|
7626070 |
13434349 |